Layer {layer}
·
f/{feat.feature_id ?? featureId}
{cat === "geom_only" ? "Geometry only" :
cat === "bio_only" ? "Database only" :
cat === "both" ? "Database + Geometry" : "No significant method"}
{/* Methods grid */}
Annotation methods · BH-corrected
7 annotation methods, highlighted bars mark q < 0.05
{det.dataset_coverage && det.dataset_coverage.pct_proteins_activated != null && (
· activates on {det.dataset_coverage.pct_proteins_activated.toFixed(1)}% of proteins
)}
{[7, 6, 2, 1, 4, 3, 5].map((mid) => METHOD_DEFS[mid - 1]).map((def) => {
const k = def.id;
const score = feat[`m${k}_score`];
const label = feat[`m${k}_label`];
const q = feat[`m${k}_q`];
const sigBool = isSig(q);
const cls = "method-card" + (sigBool ? " is-sig" : "") + " " + def.kind;
return (
{sigBool ? `q ${fmtQ(q)}` : `n.s.`}
{def.name}
{def.metric}
{fmt(score, 3)}
{label || "—"}
);
})}
{/* Top activating proteins — 3D structure + activation-shaded sequence
+ per-method confusion (geom from concordance_labels, MEME/Position computed) */}
{/* Geometric profile (radar) + GBM importance */}
{/* Activation bins — every protein renders the full ProteinEntry card
(3D + sequence + MEME / Position confusion). Geom confusion is
unavailable beyond the top 5 (concordance_labels aren't stored
for bin proteins) so the geom row gracefully shows a note. */}
{/* NMPFams metagenomic hits — same structure as Swiss-Prot panel,
but only the Geometric confusion row (no bio annotations exist
for unannotated metagenomic sequences). */}
);
}
// ────────────────────────────────────────────────────────────────────────
// Per-residue method prediction utilities
//
// All operate on a single protein given its sequence and the SAE truth mask
// (act > 0). They return a length-N array of booleans (1 = predicted).
// ────────────────────────────────────────────────────────────────────────
// All predicate names emitted by the position-enrichment pipeline. Each is a
// boolean test (i, n) -> bool that says whether residue index i (0-based) is
// inside the predicate's region of an n-residue protein.
const POSITION_PREDICATES = (() => {
const pct = (lo, hi) => (i, n) => {
const f = i / Math.max(n - 1, 1);
return f >= lo && f < hi;
};
const third = (which) => (i, n) => {
const f = i / Math.max(n - 1, 1);
return which === "N" ? f < 1/3 : which === "C" ? f >= 2/3 : (f >= 1/3 && f < 2/3);
};
// first_